LinearModelInteractionTest

Fits a linear model with interaction term and tests for significance of the interaction term.

LinearModelInteractionTest(dat, xname, yname, response = NULL)

Arguments

dat	dat is a gene expression matrix (rows genes columns samples)
xname	the name of the first gene
yname	name of the second gene
response	a vector of two class labels, if NULL then split into 50/50. odd number of samples will ignore the middle sample

Value

single value for p-value

Examples

data(STRING)
data(SKCM)
LinearModelInteractionTest(dat = SKCM,xname = "EIF3C",yname = "EIF5B")
#> [1] 0.5482295