Setter functions for scHOT objects

Setter functions for scHOT objects

testingScaffold(x) <- value

Arguments

x

A scHOT object

value

The value the slot should take

Value

A scHOT object

Examples

data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))

pairs <- t(combn(rownames(sce_MOB_subset),2))
rownames(pairs) <- apply(pairs,1,paste0,collapse = "_")

testingScaffold(scHOT_spatial) <- pairs