Function reference • scHOT

All functions
`MOB_subset`	MOB_subset spatial example data
`liver`	Liver trajectory example data
`params<-`()	Setter functions for scHOT objects
`plotColouredExpression()`	plotColouredExpression
`plotEgoNetwork()`	plotEgoNetwork
`plotHigherOrderSequence()`	plotHigherOrderSequence
`plotOrderedExpression()`	plotOrderedExpression
`positionColData<-`()	Setter functions for scHOT objects
`positionType<-`()	Setter functions for scHOT objects
`scHOT-class` `.scHOT`	scHOT class
`scHOT()`	scHOT
`scHOT_addTestingScaffold()`	scHOT_addTestingScaffold
`scHOT_buildFromMatrix()`	scHOT_buildFromMatrix
`scHOT_buildFromSCE()`	scHOT_buildFromSCE
`scHOT_calculateGlobalHigherOrderFunction()`	scHOT_calculateGlobalHigherOrderFunction
`scHOT_calculateHigherOrderTestStatistics()`	scHOT_calculateHigherOrderTestStatistics
`scHOT_estimatePvalues()`	scHOT_estimatePvalues
`scHOT_output<-`()	Setter functions for scHOT objects
`scHOT_performPermutationTest()`	scHOT_performPermutationTest
`scHOT_plotPermutationDistributions()`	scHOT_plotPermutationDistributions
`scHOT_setPermutationScaffold()`	scHOT_setPermutationScaffold
`scHOT_setWeightMatrix()`	scHOT_setWeightMatrix
`scHOT_stripOutput()`	scHOT_stripOutput
`spatialWeightMatrix()`	spatialWeightMatrix
`testingScaffold<-`()	Setter functions for scHOT objects
`thin()`	thin
`trajectoryWeightMatrix()`	trajectoryWeightMatrix
`weightMatrix<-`()	Setter functions for scHOT objects
`weightedPearson()`	weightedPearson
`weightedSpearman()`	weightedSpearman
`weightedVariance()`	weightedVariance
`weightedZIKendall()`	weightedZIKendall
`weightedZISpearman()`	weightedZISpearman

Reference

All functions