Setter functions for scHOT objects

Setter functions for scHOT objects

weightMatrix(x) <- value

Arguments

x

A scHOT object

value

The value the slot should take

Value

A scHOT object

Examples

library(SingleCellExperiment)

data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))

W <- spatialWeightMatrix(colData(scHOT_spatial)[,slot(scHOT_spatial, "positionColData")])
#> span not specified, defaulting to 0.05

weightMatrix(scHOT_spatial) <- W